Automated Evo trend drawing - cool, but has been downdated!!

Show off your finished Inkscape work.
mbogonov
Posts: 4
Joined: Tue May 11, 2010 12:08 am

Automated Evo trend drawing - cool, but has been downdated!!

Postby mbogonov » Tue May 11, 2010 12:29 am

I wasn't sure where to share this, I have some really cool work to show. About a six months to a year ago, I wrote a perl program that automatically generated random evolutionary phylogentic trees, and wrote out an SVG graphic to display them! Neat right?

While I thought this was a very cool way to use SVG graphics in my work, months later, I have returned to view and modify my phylogeny graphics and to my horror, they are no longer visible in Inkscape - which is going to make finishing my manuscript difficult. All I am able to see are the .png graphics I had made from the automated SVG outputs, and strangely the linux OS thumbnails seem to still work?? Anyway if anyone has any thoughts about what happened and how I could get this very useful application of Inkscape back up I would be very grateful. I suppose there must have been either an update in my linux OS or the Inkscape software in the interim that made my SVG graphics obselete, just didn't expect that in less than a year. I'd share what the SVGs looked like in the post, but the PNGs are the only images still visible, and this posting box interface allows uploadign svg. I am uploading the newly unreadable SVG anyway (maybe it will work?) - this is a smaller one:

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d="M 430.740740740741,160.756528742124, L 431.481481481481,158.296247744293, L 432.222222222222,157.546426909309, L 432.962962962963,161.012596116894, L 433.703703703704,154.894270730337, L 434.444444444444,155.115172991932, L 435.185185185185,152.904327548483, L 435.925925925926,149.798846685725, L 436.666666666667,140.584138302773, L 437.407407407407,143.943706669361, L 438.148148148148,142.284153973752, L 438.888888888889,146.554027189887, L 439.62962962963,142.955479636601, L 440.37037037037,134.853999240134, L 441.111111111111,148.074580694759, L 441.851851851852,146.164006537146, L 442.592592592593,143.853300898038, L 443.333333333333,144.744688547314, L 444.074074074074,146.940202038798, L 444.814814814815,149.821679047596, L 445.555555555556,156.106412012496, L 446.296296296296,159.412728979683, L 447.037037037037,156.307248116926, L 447.777777777778,159.560346312046, L 448.518518518518,163.884065136997, L 449.259259259259,163.337707452208, L 450,161.728446220538"
id="cnid00101101" />
</svg>[/svg]

User avatar
sas
Posts: 404
Joined: Sat Oct 06, 2007 5:42 am

Re: Automated Evo trend drawing - cool, but has been downdated!!

Postby sas » Tue May 11, 2010 2:51 am

The file has invalid path data. For example, one path starts like this:

M 50,250, L 50.7407407407407,246.00900448435

but the comma before the L is not allowed (see the section on paths in the SVG 1.1 spec).

Presumably Inkscape once accepted these invalid paths (probably accidently), but no longer does. (If I remember rightly, path parsing was completely rewritten between Inkscape 0.46 and 0.47.)

mbogonov
Posts: 4
Joined: Tue May 11, 2010 12:08 am

Re: Automated Evo trend drawing - cool, but has been downdated!!

Postby mbogonov » Tue May 11, 2010 3:55 am

wow, I hope that's it. Sounds plausible. I am pretty sure I was using 0.46 when I made my SVGs. I will just rewrite the perl script that writes the svg graphic not to include the comma before the L

I will retry and see if I can share my phylogeny models. I figured that this might be a novel use of SVG?

How I wrote the original script was in the following way. Basically, I drew a picture with lines of the thickness I wanted my phylogeny lines, then I read the text of the SVG, interpretted vaguely how it worked (I figured those coordinates articulated the the vertices of the line) and had my perl script write out in that format. That means, probably whatever I originally wrote was taken directly from what was originally output from an inkscape gui session, rather being built up from first principles of the SVG code. I suppose it could be an error in my perl code SVG write-out, an error that in the past was of no consequence in 0.46.

I'll try that - thanks for the response. Much appreciated.


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